PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 221aa    MW: 25369.8 Da    PI: 4.3719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-0582104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+k+Fs + +L  H++ H
  XP_009111738.1  82 FTCRFCNKRFSASQSLGGHMNAH 104
                     89******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-678107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-779109No hitNo description
PROSITE profilePS5015710.74182109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MENQVMSSGS SSVVQPEKCN DINVAVEESR EKATENNNSG LGSDPQEVMS ERRIENPSRG  60
YSAVRTENGI MQHYTSETNK IFTCRFCNKR FSASQSLGGH MNAHKRELQW ERKRKEMEQM  120
EQEFHFQWML SQYSQGGLEP MPSYNNYPPM LPRNVPPFPP HRTTNLPSYW YPQENVLNEE  180
DVILKLGNDN IVEIDDDDDD DDAVDQPEEG TSKSWGADLS L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111738.11e-167PREDICTED: zinc finger protein JAGGED-like
TrEMBLA0A078G2U11e-138A0A078G2U1_BRANA; BnaA09g03920D protein
STRINGBra036608.1-P1e-94(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.19e-49C2H2 family protein